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Pull requests: nf-core/tools

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Pull requests list

Use the org from .nf-core.yml when linting multiqc_config report_comment
#3800 opened Oct 4, 2025 by SZhengP Loading…
3 tasks
3
TEMPLATE: add a fallback for new outputdir parameter
#3798 opened Oct 3, 2025 by mashehu Loading…
1
Update dependency textual to v6
#3793 opened Oct 2, 2025 by renovate bot Loading…
1 task
4
Migrate template to nf-core-utils plugin
#3790 opened Oct 1, 2025 by edmundmiller Loading…
4 tasks
5
Add topics to the template + update linting
#3779 opened Sep 26, 2025 by nvnieuwk • Draft
4 tasks
2
feat: Add Claude Code hooks for automated testing and linting
#3774 opened Sep 25, 2025 by edmundmiller • Draft
4 tasks done
3.5.0
@edmundmiller
3
Template: Update multiqc to 1.31
#3766 opened Sep 22, 2025 by jpfeuffer Loading…
4 tasks done
14
Fixe Issues/3735: Check for docker and docker daemon and fail before download
#3752 opened Sep 9, 2025 by JulianFlesch Loading…
4 tasks
@JulianFlesch
3
Fix Issues/3729: Cleanup nextflow files / directories after pipeline download download nf-core download enhancement
#3750 opened Sep 9, 2025 by JulianFlesch Loading…
2 of 4 tasks
@JulianFlesch
3
Testing out Reftrace for regex replacement in modules
#3745 opened Sep 2, 2025 by ningyuxin1999 • Draft
4 tasks
3.5.0
@ningyuxin1999
4
Use branch-deploy action
#3744 opened Sep 2, 2025 by kevinbackhouse Loading…
4 tasks
3
Tests cleanup
#3733 opened Aug 27, 2025 by edmundmiller • Draft
2
@edmundmiller
15
General: add pytest for get_wf_files
#3725 opened Aug 26, 2025 by mirpedrol Loading…
7
Patch patch command
#3714 opened Aug 15, 2025 by ErikDanielsson Loading…
2 of 4 tasks
@ErikDanielsson
5
TEMPLATE - add trainling slash for pipelines_testdata_base_path
#3701 opened Aug 5, 2025 by maxulysse Loading…
4 tasks
2
Automatically sync the Rocrate and README content during pipelines lint
#3688 opened Jul 28, 2025 by ningyuxin1999 Loading…
4 tasks
14
Lint for version captures in modules
#3676 opened Jul 11, 2025 by edmundmiller Loading…
4 tasks
3.4.0
@edmundmiller
21
Update nf-test.yml
#3673 opened Jul 9, 2025 by maxulysse Loading…
4 tasks
8
Fix collectFile cache issue causing software version inconsistencies
#3654 opened Jul 2, 2025 by ewels • Draft
2 of 4 tasks
1
@ewels
11
Add .nf-test folder to prettierignore list
#3625 opened Jun 17, 2025 by jonasscheid Loading…
4 tasks
linting: fix type error when linting modules.json
#3611 opened Jun 11, 2025 by mashehu Loading…
1
Download pipelines with authenticated GH API calls
#3607 opened Jun 5, 2025 by jpfeuffer Loading…
1 of 4 tasks
@JulianFlesch
19
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
13
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.5.0
11
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
ProTip! Updated in the last three days: updated:>2025-10-01.