Skip to content
Closed
Show file tree
Hide file tree
Changes from 2 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
54 changes: 54 additions & 0 deletions src/workbench-jupyter-docker/.devcontainer.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,54 @@
{
"name": "Workbench JupyterLab with docker support devcontainer template",
"dockerComposeFile": "docker-compose.yaml",
"service": "app",
"shutdownAction": "none",
"workspaceFolder": "/workspace",
"postCreateCommand": [
"./startupscript/post-startup.sh",
"jupyter",
"/home/jupyter",
"${templateOption:cloud}",
"${templateOption:login}"
],
// re-mount bucket files on container start up
"postStartCommand": [
"./startupscript/remount-on-restart.sh",
"jupyter",
"/home/jupyter",
"${templateOption:cloud}",
"${templateOption:login}"
],
"remoteUser": "root",
"customizations": {
"workbench": {
"opens": {
"extensions": [
// Source
".ipynb",
".R",
".py",
// Documents
".md",
".html",
".latex",
".pdf",
// Images
".bmp",
".gif",
".jpeg",
".jpg",
".png",
".svg",
// Data
".csv",
".tsv",
".json",
".vl"
],
"fileUrlSuffix": "/lab/tree/{path}",
"folderUrlSuffix": "/lab/tree/{path}"
}
}
}
}
17 changes: 17 additions & 0 deletions src/workbench-jupyter-docker/README.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@

# Custom Workbench JupyterLab App Template (workbench-jupyter-docker)

A template used to serve the Workbench custom JupyterLab app.

## Options

| Options Id | Description | Type | Default Value |
|-----|-----|-----|-----|
| cloud | VM cloud environment | string | gcp |
| login | Whether to log in to workbench CLI | string | false |



---

_Note: This file was auto-generated from the [devcontainer-template.json](devcontainer-template.json). Add additional notes to a `NOTES.md`._
23 changes: 23 additions & 0 deletions src/workbench-jupyter-docker/devcontainer-template.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
{
"id": "custom-workbench-jupyter-template",
"description": "A template used to serve the Workbench JupyterLab container image",
"version": "0.0.1",
"name": "Workbench Prebuilt JupyterLab Template",
"documentationURL": "https://github.com/verily-src/workbench-app-devcontainers/tree/master/src/custom-workbench-jupyter-template",
"licenseURL": "https://github.com/verily-src/workbench-app-devcontainers/blob/master/LICENSE",
"options": {
"cloud": {
"type": "string",
"description": "VM cloud environment",
"proposals": ["gcp", "aws"],
"default": "gcp"
},
"login": {
"type": "string",
"description": "Whether to log in to workbench CLI",
"proposals": ["true", "false"],
"default": "false"
}
},
"platforms": ["Any"]
}
24 changes: 24 additions & 0 deletions src/workbench-jupyter-docker/docker-compose.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,24 @@
version: "2.4"
services:
app:
container_name: "application-server"
image: "us-central1-docker.pkg.dev/verily-workbench-public/apps/workbench-jupyter:latest"
user: "jupyter"
restart: always
volumes:
- .:/workspace:cached
# Mount docker socket so application can access the docker daemon in the host
- /var/run/docker.sock:/var/run/docker.sock
Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Here is the snipped added to for docker to work. We still must install docker in the app to access the mounted daemon though.

ports:
- "8888:8888"
networks:
- app-network
cap_add:
- SYS_ADMIN
devices:
- /dev/fuse
security_opt:
- apparmor:unconfined
networks:
app-network:
external: true
Loading