QC systems for metabolomics studies
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Updated
Sep 17, 2025 - R
QC systems for metabolomics studies
Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463
Scripts & Data for XCMS Workshop, Metabolomics 2018 in Seattle
MSBrowser is an R Shiny dashboard for interactive visualization and fine-tuning of peak picking parameters in the xcms R package. It supports LC-MS and GC-MS data for small molecule metabolomics and can be deployed via Shiny Server for cloud or on-premises hosting.
The purpose of the cpc package is primarily to characterize the peaks detected using a separate peak detection method. Currently the only supported preprocessing software is XCMS.
Ginkgo Bioworks' extensions and fixes to XCMS
Process, visualise and analyze sets of GC/LC-MS based data
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