Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Gene set variation analysis
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
CAusal Reasoning for Network Identification with integer VALue programming in R
Lightweight Iterative Gene set Enrichment in R
Explore the cancer relevance of your gene list
From RNA-seq raw reads to enriched pathways by DEGs
Analysis and visualization of RNA-Seq results
Explore biomolecular pathways in Reactome from the command-line or a Python script
Python Client Package for WikiPathways
TUCCA's RNA-Seq Workflow for Differential Expression and Pathway Enrichment Analysis
R package for visualising high-dimensional categorical data
A Python package for benchmarking pathway database with functional enrichment and classification methods
Single sample pathway analysis tools for omics data
The Kinase Library: a Global Atlas of the Human Protein Kinome
WikiPathways Database
A Python package for metabolite enrichment analysis.
FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
R package for de novo pathway enrichment using KeyPathwayMiner
Representation and Quantification Of Module Activity in Single Cells
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