Applied cargo fmt and cargo clippy

mzio-rs/src/fasta/entry.rs

@@ -7,7 +7,7 @@ pub struct Entry {
     entry_name: String,
     protein_name: String,
     keyword_attributes: HashMap<String, String>,
-    sequence: String
+    sequence: String,
 }
 
 impl Entry {
@@ -20,54 +20,60 @@ impl Entry {
     /// * `protein_name` - Protein name
     /// * `keyword_attributes` - Additional keyword attributes, e.g. OX=381666
     /// * `sequence` - Amino acid sequence
-    /// 
-    pub fn new(database: String, accession: String, entry_name: String, protein_name: String,
-        keyword_attributes: HashMap<String, String>, sequence: String) -> Self {
-            Self {
-                database,
-                accession,
-                entry_name,
-                protein_name,
-                keyword_attributes,
-                sequence
-            }
+    ///
+    pub fn new(
+        database: String,
+        accession: String,
+        entry_name: String,
+        protein_name: String,
+        keyword_attributes: HashMap<String, String>,
+        sequence: String,
+    ) -> Self {
+        Self {
+            database,
+            accession,
+            entry_name,
+            protein_name,
+            keyword_attributes,
+            sequence,
         }
+    }
 
-        /// Returns the database type
-        ///
-        pub fn get_database(&self) -> &str {
-            &self.database.as_str()
-        }
+    /// Returns the database type
+    ///
+    pub fn get_database(&self) -> &str {
+        self.database.as_str()
+    }
 
-        /// Returns the accession
-        ///
-        pub fn get_accession(&self) -> &str {
-            &self.accession
-        }
+    /// Returns the accession
+    ///
+    pub fn get_accession(&self) -> &str {
+        &self.accession
+    }
 
-        /// Entry name
-        ///
-        pub fn get_entry_name(&self) -> &str {
-            &self.entry_name
-        }
+    /// Entry name
+    ///
+    pub fn get_entry_name(&self) -> &str {
+        &self.entry_name
+    }
 
-        /// Returns the protein name
-        ///
-        pub fn get_protein_name(&self) -> &str {
-            &self.protein_name
-        }
+    /// Returns the protein name
+    ///
+    pub fn get_protein_name(&self) -> &str {
+        &self.protein_name
+    }
 
-        /// Returns additional keyword attributes, e.g
-        /// * OX = 381666
-        /// * GN = acoX
-        ///
-        pub fn get_keyword_attributes(&self) -> &HashMap<String, String> {
-            &self.keyword_attributes
-        }
+    /// Returns additional keyword attributes, e.g
+    /// * OX = 381666
+    /// * GN = acoX
+    ///
+    pub fn get_keyword_attributes(&self) -> &HashMap<String, String> {
+        &self.keyword_attributes
+    }
 
-        /// Returns the amino acid sequence
-        /// 
-        pub fn get_sequence(&self) -> &str {
-            &self.sequence
-        }
-}
+    /// Returns the amino acid sequence
+    ///
+    pub fn get_sequence(&self) -> &str {
+        &self.sequence
+    }
+}

mzio-rs/src/fasta/mod.rs

@@ -9,9 +9,9 @@ mod test {
     use std::fs;
     use std::path::Path;
 
-    const FASTA_FILE_PATH_STR: &'static str = "./test_files/fasta/partial_mouse.fasta";
+    const FASTA_FILE_PATH_STR: &str = "./test_files/fasta/partial_mouse.fasta";
     const EXPECTED_NUM_PROTEINS: usize = 10;
-    const TEMP_FASTA_PATH_STR: &'static str = "./test_files/fasta/partial_mouse.fasta.tmp";
+    const TEMP_FASTA_PATH_STR: &str = "./test_files/fasta/partial_mouse.fasta.tmp";
 
     #[test]
     /// Reads a FASTA file, parses the proteins,
@@ -20,22 +20,20 @@ mod test {
         let fasta_file_path = Path::new(FASTA_FILE_PATH_STR);
         let tmp_fasta_file_path = Path::new(TEMP_FASTA_PATH_STR);
 
-        let reader = reader::Reader::new(
-            fasta_file_path,
-            1024
-        ).unwrap();
+        let reader = reader::Reader::new(fasta_file_path, 1024).unwrap();
 
         let entries: Vec<entry::Entry> = reader.into_iter().collect();
         assert_eq!(entries.len(), EXPECTED_NUM_PROTEINS);
 
-        let mut writer = writer::Writer::new(
-            tmp_fasta_file_path
-        ).unwrap();
+        let mut writer = writer::Writer::new(tmp_fasta_file_path).unwrap();
 
         writer.write_all(entries.iter(), true).unwrap();
         writer.flush().unwrap();
 
-        let tmp_fasta_content  = fs::read_to_string(tmp_fasta_file_path).unwrap().trim().to_string();
+        let tmp_fasta_content = fs::read_to_string(tmp_fasta_file_path)
+            .unwrap()
+            .trim()
+            .to_string();
         fs::remove_file(tmp_fasta_file_path).unwrap();
 
         assert_eq!(