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simd-minimizers 2.0.1

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@RagnarGrootKoerkamp RagnarGrootKoerkamp released this 26 Sep 13:28
· 14 commits to master since this release

Features

  • Add support for _skip_ambiguous_windows variants that omit minimizers for windows containing non-ACTG characters (such as NYR).
  • Use seq-hash crate to cleanly support multiple types of hashers; add *_with_hasher function variants.
  • Faster processing of short sequences by avoiding overly large allocations and faster 'warmup' on the first k+w-2 iterations, and reusing allocated buffers.

Breaking

  • Change top-level API to a builder, to avoid exponential blowup in the number of functions.

Other changes

  • bump packed-seq to 4.0.0
  • Use rust 2024 edition