Update nf-core/tools API docs for dev

sites/docs/src/content/api_reference/dev/api/utils.md

@@ -984,7 +984,7 @@ Generate a dictionary representation of the model, optionally specifying which f
   - **exclude_defaults** – Whether to exclude fields that are set to their default value.
   - **exclude_none** – Whether to exclude fields that have a value of None.
   - **exclude_computed_fields** – Whether to exclude computed fields.
-    While this can be useful for round-tripping, it is usually recommended tu use the dedicated
+    While this can be useful for round-tripping, it is usually recommended to use the dedicated
     round_trip parameter instead.
   - **round_trip** – If True, dumped values should be valid as input for non-idempotent types such as Json\[T].
   - **warnings** – How to handle serialization errors. False/”none” ignores them, True/”warn” logs errors,

sites/docs/src/content/api_reference/dev/module_lint_tests/main_nf.md

@@ -14,7 +14,7 @@ The test checks for the following:
 - The module has a process label and it is among
   the standard ones.
 - If a `meta` map is defined as one of the modules
-  inputs it should be defined as one of the outputs,
+  inputs it should be defined as one of the emits,
   and be correctly configured in the `saveAs` function.
 - The module script section should contain definitions
   of `software` and `prefix`

sites/docs/src/content/api_reference/dev/pipeline_lint_tests/rocrate_readme_sync.md

@@ -3,4 +3,4 @@
 #### `PipelineLint.rocrate_readme_sync(){:python}`
 
 Check if the RO-Crate description in ro-crate-metadata.json matches the README.md content.
-If the –fix is set, the RO-Crate description will be updated to match the README.md content.
+If not, the RO-Crate description will be automatically updated to match the README.md content during linting.