7918 pharokka update stub

[shivangi-7]

nf-core/modules pull request

Closes:

#7918
#8887
#8888

[shivangi-7]

Module pharokka/pharokka is failing with conda ("bioconda::pharokka=1.7.3"): https://github.com/nf-core/modules/actions/runs/17699963696/job/50304997129?pr=9055. It works fine with docker. It seems like problem with the conda environment.

Traceback from the failed check:

Traceback (most recent call last):
    >     File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/pharokka.py", line 489, in <module>
    >       main()
    >     File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/pharokka.py", line 128, in main
    >       ) = check_dependencies(args.skip_mash)
    >     File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/input_commands.py", line 379, in check_dependencies
    >       phanotate_major_version = int(phanotate_version.split(".")[0])
    >   ValueError: invalid literal for int() with base 10: '/home/runner/_work/modules/modules/'

@CarsonJM - I am wondering if you would know anything about and if you would be able to help please?