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  • style: Add sort-simple-yaml
  • fix: This isn't working
  • style: Copy conda env sorter script hook
  • chore: Remove empty environment yamls
  • chore: Add missing environment.yml
  • style: Run conda-env-sorter, then prettier
  • style: Check for yaml-language-server in environment.ymls
  • style: Have conda_env_sorter use 2 spaces
  • style: Check version snapshot

Closes #6505

This fixes an issue with the Seqera containers naming.

The Seqera containers site doesn't care about the context of what module the
image is for. It just sorts the dependencies.

This avoids having multiple containers with a bunch of different names.

Should probably handle that on the wave-cli side.
https://github.com/MarcoGorelli/madforhooks has been archived so I just
copied this into the repo to make it simple to use
conda-env-sorter doesn't make the files pretty
@edmundmiller edmundmiller self-assigned this Nov 26, 2024
@edmundmiller edmundmiller mentioned this pull request Nov 26, 2024
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this should be part of nf-core modules lint and not here, no?

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I think I just imagined a world where the linting was always up to date in modules because the code for the lints lived in modules.

But that wouldn't work for local modules.

Maybe for new rules that we're just starting to introduce while we're still catching the rough edges?

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Closing in favor of nf-core/tools#3676

@github-project-automation github-project-automation bot moved this from In Progress to Done in nf-core infrastructure projects Jul 29, 2025
@github-project-automation github-project-automation bot moved this from In progress to Closed in 2025 spring cleaning - modules (PRs) Jul 29, 2025
@edmundmiller edmundmiller deleted the check-proper-versions-snapshot branch July 29, 2025 12:30
@edmundmiller edmundmiller mentioned this pull request Aug 23, 2025
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Snapshot content of version files instead of a hash
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