Add slot to capture long read sequencing DNA extraction method #2662
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pinged Mark to review |
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Apologies for my slow response. Is it fair to say that
Does anyone have a sense of the best way for me to see the new elements? |
src/schema/portal_user_facility.yaml
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| recommended: true | ||
| deprecated: true; as of 2025-10-10, NMDC doesn't need to store this JGI metadata slot & it's now captured directly in the submission portal schema to support submissions | ||
| dna_lr_isolate_meth: | ||
| description: Describe the method/protocol/kit used to extract DNA/RNA. |
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I'm inclined to ask for the description to say something about the goal of extracting DNA fragments of a certain length
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These slots will be captured in mongoDB. That's why I've added them here and removed the ones that are submission portal only.
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If we won't have records for this slot, it shouldn't be in nmdc-schema.
The information this slot is meant to capture would go on Class: Extraction
Should still update this description to clarify this if the long-read extraction method.
Removed string_serialization from several fields and added range for emsl_store_temp, project_id, and replicate_number. Updated deprecation notes for certain metadata slots.
Updated description for dna_lr_isolate_meth to specify long read sequencing.
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Additional changes to these slots to be addressed |
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Closes microbiomedata/issues#413
submission-schema& do not need to be stored by NMDC