Thank you very much for checking out my GitHub page!

I'm a Bioinformatician and full-stack web developer, experienced in developing and automating next-generation sequencing (NGS) data analysis pipelines. My experience spans various aspects of bioinformatics and web development, including the analysis of clinical whole-exome, whole-genome, and RNA-seq samples.

In my previous roles, I've developed databases containing variant annotations and their allele frequencies across different populations using in-house cohorts. I've also created a real-time dashboard for users to monitor the status of the NGS variant calling pipeline and access QC metrics and other results. Additionally, I've contributed to the development of a novel machine-learning approach that predicts the immunogenicity of a peptide using various features derived from amino-acid composition, HLA-binding, structural features, peptide processing, and peptide transport. My work experience also includes developing scripts and tools for interacting with public databases.

• Developed and deployed bioinformatics workflows on cloud-based platforms such as Terra.bio and Verily Workbench, using Cromwell as the workflow engine and Google Cloud Platform (GCP) infrastructure.

  • Checkout my Dockstore entries (maurya-anand OR anand-imcm OR IMCM-OX): Visit Dockstore

• Gauchian Enrich: A variant annotator for variants called by Illumina Gauchian tool. (Perl, Make, Docker)

  • Repo: https://github.com/maurya-anand/gauchian-enrich

• SRA annotator: A command-line tool for retrieving annotations from the NCBI SRA database. (Python)

  • Repo: https://github.com/maurya-anand/sra-annotator

• ARA (Automated Record Analysis): An automatic pipeline for exploration of SRA datasets with sequences as a query (Perl, Docker)

  • Repo: https://github.com/maurya-anand/ARA

• Get Bam Depth: A command-line tool to generate a customised report calculating depth of coverage from BAM, SAM, or CRAM files for a given threshold. (Perl)

  • Repo: https://github.com/maurya-anand/getBamDepth

• Variant Liftover: A command-line tool for performing liftover of SNVs and InDels from hg19 to hg38, using CHR, POS, REF, and ALT (tsv) as input. (Make, Python, Docker)

  • Repo: https://github.com/maurya-anand/liftover

• Covid19 tracker: (Python Django, HighchartsJS)

  • Demo: https://covidlive-8jvw.onrender.com/
  • Repo: https://github.com/maurya-anand/covid19live

• Word usage using dictionary API: (ReactJS)

  • Demo: https://dictionary-aa43b.web.app/
  • Repo: https://github.com/maurya-anand/react-dictionary

• Netflix-clone using themoviedb API: (ReactJS)

  • Demo: https://netflix-react-a5dbe.web.app/
  • Repo: https://github.com/maurya-anand/netflix-react

• Data analysis pipeline development and automation.
• Whole-genome, whole-exome, and RNA-seq analysis for short-read (Illumina) and long-read (PacBio HiFi) sequencing data.
• Somatic and germline variant calling and annotation.