Skip to content

Cluster CCF Trace, Cluster Colors, and Cell Pop bug fixes #1

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Open
wants to merge 6 commits into
base: master
Choose a base branch
from
Open

Cluster CCF Trace, Cluster Colors, and Cell Pop bug fixes #1

wants to merge 6 commits into from

Conversation

ConorMesser
Copy link

  • Allows output of the cluster CCF trace with option --cluster_ccf_trace when running BuildTree or CellPopulation
  • Allows for selecting the colors for non-consecutive clusters (if trying to match WES and WGS runs, for instance) by passing a comma-separated list to --cluster_order
  • Allows for selecting a certain tree number (--tree_number <iter_one_indexed>) when running CellPopulation, to get the CCF Trace for a specific tree iteration
  • Bug fixes in CellPopulation so it can run alone

gpmoorhead1 pushed a commit that referenced this pull request Sep 30, 2024
@jalberge
Merge pull request #1 from jalberge/dev_hg19
0542578 
adding back single patient timing + different centromeres and chromosome size for hg19/hg38
phylyc referenced this pull request in phylyc/PhylogicNDT Aug 12, 2025
@phylyc
merge Cluster CCF Trace, Cluster Colors, and Cell Pop bug fixes #1 PR…
0add0c4 
… from getzlab repo
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

No reviews

Assignees

No one assigned

Labels

None yet

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

1 participant

@ConorMesser