sc-pipeline-1.1.2

v1.1.2

merge use staging into main

sc-annotate version 1.1.1

Major changes:

• use mouse author labels instead of CELLxGENE labels to include hippocampus cells
• add MultiQC report
• clean up cell type ontologies using rename_file
• add protocol and name tattributes o CellTypeAssignment
• change main.nf > sc-annotate.nf
• send processes to SLURM by default
• add option to use pre-downloaded MEX
• version 1.11.0 > 1.1.1

see PR for full list of updates.