From acfbc4f8d4f51a67ae7239ab1651d8ab67fc2fdd Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 25 Mar 2025 19:16:43 +0000
Subject: [PATCH] Bump biopython from 1.79 to 1.85

Bumps [biopython](https://github.com/biopython/biopython) from 1.79 to 1.85.
- [Changelog](https://github.com/biopython/biopython/blob/master/NEWS.rst)
- [Commits](https://github.com/biopython/biopython/commits)

---
updated-dependencies:
- dependency-name: biopython
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile      |   2 +-
 Pipfile.lock | 146 ++++++++++++++++++++++++++++++++-------------------
 2 files changed, 94 insertions(+), 54 deletions(-)

diff --git a/Pipfile b/Pipfile
index 3413a41..6eab759 100644
--- a/Pipfile
+++ b/Pipfile
@@ -12,7 +12,7 @@ devtools = {extras = ["pygments"], version = "*"}
 
 [packages]
 requests = "==2.28.1"
-biopython = "==1.79"
+biopython = "==1.85"
 parsec = "==3.13"
 networkx = "==2.8.4"
 python-arango = "==7.4.1"
diff --git a/Pipfile.lock b/Pipfile.lock
index 58c4184..3bb006d 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "2fc71f7f06f254449387566cbb02ec92d74ad824cb3511daf5be000d4d52999b"
+            "sha256": "d4daaeea8cf33ee6c26119f872aefb93f2a0f1a425990f83d185d78723101ac4"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -18,35 +18,42 @@
     "default": {
         "biopython": {
             "hashes": [
-                "sha256:03ee5c72b3cc3f0675a8c22ce1c45fe99a32a60db18df059df479ae6cf619708",
-                "sha256:155c5b95857bca7ebd607210cb9d8ea459bb0b86b3ca37ea44ec47c26ede7e9a",
-                "sha256:2dbb4388c75b5dfca8ce729e791f465c9c878dbd7ba2ab9a1f9854609d2b5426",
-                "sha256:365569543ea58dd07ef205ec351c23b6c1a3200d5d321eb28ceaecd55eb5955e",
-                "sha256:4b3d4eec2e348c3d97a7fde80ee0f2b8ebeed849d2bd64a616833a9be03b93c8",
-                "sha256:4be31815226052d86d4c2f6a103c40504e34bba3e25cc1b1d687a3203c42fb6e",
-                "sha256:51eb467a60c38820ad1e6c3a7d4cb10535606f559646e824cc65c96091d91ff7",
-                "sha256:5ae69c5e09769390643aa0f8064517665df6fb99c37433821d6664584d0ecb8c",
-                "sha256:72a1477cf1701964c7224e506a54fd65d1cc5228da200b634a17992230aa1cbd",
-                "sha256:76988ed3d7383d566db1d7fc69c9cf136c6275813fb749fc6753c340f81f1a8f",
-                "sha256:83bfea8a19f9352c47b13965c4b73853e7aeef3c5aed8489895b0679e32c621b",
-                "sha256:884a2b99ac7820cb84f70089769a512e3238ee60438b8c934ed519613dc570ce",
-                "sha256:8f33dafd3c7254fff5e1684b965e45a7c08d9b8e1bf51562b0a521ff9a6f5ea0",
-                "sha256:947b793e804c59ea45ae46945a57612ad1789ca87af4af0d6a62dcecf3a6246a",
-                "sha256:9580978803b582e0612b71673cab289e6bf261a865009cfb9501d65bc726a76e",
-                "sha256:98deacc30b8654cfcdcf707d93fa4e3c8717bbda07c3f9f828cf84753d4a1e4d",
-                "sha256:9eadfd4300f534cd4fa39613eeee786d2c3d6b981d373c5c46616fa1a97cad10",
-                "sha256:aa23a83a220486af6193760d079b36543fe00afcfbd18280ca2fd0b2c1c8dd6d",
-                "sha256:ab93d5749b375be3682866b3a606aa2ebd3e6d868079793925bf4fbb0987cf1f",
-                "sha256:b3ab26f26a1956ef26303386510d84e917e31fcbbc94918c336da0163ef628df",
-                "sha256:bf634a56f449a4123e48e538d661948e5ac29fb452acd2962b8cb834b472a9d7",
-                "sha256:ceab668be9cbdcddef55ad459f87acd0316ae4a00d32251fea4cf665f5062fda",
-                "sha256:d9f6ce961e0c380e2a5435f64c96421dbcebeab6a1b41506bd81251feb733c08",
-                "sha256:e921571b51514a6d35944242d6fef6427c3998acf58940fe1f209ac8a92a6e87",
-                "sha256:edb07eac99d3b8abd7ba56ff4bedec9263f76dfc3c3f450e7d2e2bcdecf8559b",
-                "sha256:f0a7e1d94a318f74974345fd0987ec389b16988ec484e67218e900b116b932a8"
+                "sha256:0ffb03cd982cb3a79326b84e789f2093880175c44eea10f3030c632f98de24f6",
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+                "sha256:434dd23e972b0c89e128f2ebbd16b38075d609184f4f1fd16368035f923019c2",
+                "sha256:5916eb56df7ecd4a3babc07a48d4894c40cfb45dc18ccda1c148d0131017ce04",
+                "sha256:5a236ab1e2797c7dcf1577d80fdaafabead2908bc338eaed0aa1509dab769fef",
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+                "sha256:6985e17a2911defcbd30275a12f5ed5de2765e4bc91a60439740d572fdbfdf43",
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+                "sha256:7c8326cd2825ba166abecaf72843b9b15823affd6cec04fde65f0d2526767da4",
+                "sha256:8208bf2d87ade066fafe9a63a2eb77486c233bc1bdda2cbf721ebee54715f1bf",
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+                "sha256:86e487b6fe0f20a2b0138cb53f3d4dc26a7e4060ac4cb6fb1d19e194d445ef46",
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+                "sha256:9a08d082e85778259a83501063871e00ba57336136403b75050eea14d523c00a",
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+                "sha256:b0cec8833bf3036049129944ee5382dd576dac9670c3814ff2314b52aa94f199",
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+                "sha256:cf88a4c8d8af13138be115949639a5e4a201618185a72ff09adbe175b7946b28",
+                "sha256:cffc15ac46688cd4cf662b24d03037234ce00b571df67be45a942264f101f990",
+                "sha256:d024ad48997ad53d53a77da24b072aaba8a550bd816af8f2e7e606a9918a3b43",
+                "sha256:d3c99db65d57ae4fc5034e42ac6cd8ddce069e664903f04c8a4f684d7609d6fa",
+                "sha256:d6f8efb2db03f2ec115c5e8c764dbadf635e0c9ecd4c0e91fc8216c1b62f85f5",
+                "sha256:d76e44b46f555da2e72ac36e757efd327f7f5f690e9f00ede6f723b48538b6d5",
+                "sha256:d93464e629950e4df87d810125dc4e904538a4344b924f340908ea5bc95db986",
+                "sha256:db8822adab0cd75a6e6ae845acf312addd8eab5f9b731c191454b961fc2c2cdc",
+                "sha256:e54e495239e623660ad367498c2f7a1a294b1997ba603f2ceafb36fd18f0eba6",
+                "sha256:f2f45ab3f1e43fdaa697fd753148999090298623278097c19c2c3c0ba134e57c"
             ],
             "index": "pypi",
-            "version": "==1.79"
+            "markers": "python_version >= '3.9'",
+            "version": "==1.85"
         },
         "certifi": {
             "hashes": [
@@ -105,31 +112,64 @@
         },
         "numpy": {
             "hashes": [
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