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We're experiencing the same issue as well, we've noticed this is happening to us mainly when multiple (10-20 jobs) JTE jobs are running at the same time, and when the jobs are executed they are getting stuck in the JTE library load part for around 10m-15m which is a major pain.
I'm trying to understand where is the bottleneck that is causing this but haven't found it yet, the disk utilization seems normal re IOPS / throughput, is there some common resource that is being used on the Jenkins server by all the jobs and they are waiting for each other to finish? I'd appreciate the help as we are neck deep in the implementation with JTE and this is becoming a serious issue for us, thanks!